PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc01324.1.g00080.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 186aa    MW: 19813 Da    PI: 7.9354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc01324.1.g00080.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-191867255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g
  Zpz_sc01324.1.g00080.1.sm.mk 18 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 67
                                  59*******.7*********83...36*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.9E-331881IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-211875IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-291876IPR001471AP2/ERF domain
PROSITE profilePS5103222.1681875IPR001471AP2/ERF domain
CDDcd000187.69E-161874No hitNo description
PfamPF008475.6E-121867IPR001471AP2/ERF domain
PRINTSPR003677.5E-81930IPR001471AP2/ERF domain
PRINTSPR003677.5E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MRRNKPPQPQ PSPSPEIRYR GVRRRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA  60
AARSLRGPTA RTNFPSAAPR PRAPAPVPAA TSSHSSTVES WSGGAPRAVS TLARSAAPTE  120
EEEDCHSYCG SSSFVLCEDA GCDDAAASRS PLPFDLNLPP PLDAAAEANQ IDADQIGARY  180
DTLLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-161975360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-161975663ATERF1
3gcc_A1e-161975663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695192e-77BT069519.1 Zea mays full-length cDNA clone ZM_BFb0155J08 mRNA, complete cds.
GenBankKJ7275492e-77KJ727549.1 Zea mays clone pUT5409 AP2-EREBP transcription factor (EREB19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437494.11e-73hypothetical protein SORBIDRAFT_10g028110
TrEMBLA3BEV81e-75A3BEV8_ORYSJ; Uncharacterized protein
STRINGSb10g028110.14e-73(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.19e-10ethylene response factor 7